Real-time PCR method for detection of short DNA using a deoxyuridine probe and application for detection of fomivirsen

This study sought to develop a short DNA detection method using a deoxyuridine probe and polymerase chain reaction. The probe was hybridized to the target short DNA, which was then extended by DNA polymerase. The extended DNA was used for real-time PCR after the probe was removed by uracil DNA glyco...

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Veröffentlicht in:BioTechniques. - 1988. - 73(2022), 6 vom: 18. Dez., Seite 281-287
1. Verfasser: Harikai, Naoki (VerfasserIn)
Weitere Verfasser: Tanaka, Yuko, Miyashita, Satoshi, Zaima, Kazumasa, Shinomiya, Kazufusa
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2022
Zugriff auf das übergeordnete Werk:BioTechniques
Schlagworte:Journal Article Research Support, Non-U.S. Gov't fomivirsen nucleic acid medicine polymerase chain reaction short DNA uracil DNA glycosylase QX5LK7YCHV DNA 9007-49-2 mehr... Thionucleotides Deoxyuridine W78I7AY22C
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245 1 0 |a Real-time PCR method for detection of short DNA using a deoxyuridine probe and application for detection of fomivirsen 
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520 |a This study sought to develop a short DNA detection method using a deoxyuridine probe and polymerase chain reaction. The probe was hybridized to the target short DNA, which was then extended by DNA polymerase. The extended DNA was used for real-time PCR after the probe was removed by uracil DNA glycosylase. This method measured from 0.01 to 10 nM of a model short DNA sequence of 17 nucleotides. The method was then used to detect the nucleic acid medicine fomivirsen, as well as 21 phosphorothioate nucleotides, and to quantify 0.1-100 nM of fomivirsen. This method may be useful for detecting short DNA fragments, such as functional nucleotides 
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700 1 |a Miyashita, Satoshi  |e verfasserin  |4 aut 
700 1 |a Zaima, Kazumasa  |e verfasserin  |4 aut 
700 1 |a Shinomiya, Kazufusa  |e verfasserin  |4 aut 
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