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231225s2019 xx |||||o 00| ||eng c |
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|a 10.1111/nph.15369
|2 doi
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|a pubmed24n0957.xml
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|e rakwb
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|a eng
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|a Bhadauria, Vijai
|e verfasserin
|4 aut
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|a Genetic map-guided genome assembly reveals a virulence-governing minichromosome in the lentil anthracnose pathogen Colletotrichum lentis
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|c 2019
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|a Text
|b txt
|2 rdacontent
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|a ƒaComputermedien
|b c
|2 rdamedia
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|a ƒa Online-Ressource
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|2 rdacarrier
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|a Date Completed 21.01.2020
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|a Date Revised 30.09.2020
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|a published: Print-Electronic
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|a Citation Status MEDLINE
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|a © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.
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|a Colletotrichum lentis causes anthracnose, which is a serious disease on lentil and can account for up to 70% crop loss. Two pathogenic races, 0 and 1, have been described in the C. lentis population from lentil. To unravel the genetic control of virulence, an isolate of the virulent race 0 was sequenced at 1481-fold genomic coverage. The 56.10-Mb genome assembly consists of 50 scaffolds with N50 scaffold length of 4.89 Mb. A total of 11 436 protein-coding gene models was predicted in the genome with 237 coding candidate effectors, 43 secondary metabolite biosynthetic enzymes and 229 carbohydrate-active enzymes (CAZymes), suggesting a contraction of the virulence gene repertoire in C. lentis. Scaffolds were assigned to 10 core and two minichromosomes using a population (race 0 × race 1, n = 94 progeny isolates) sequencing-based, high-density (14 312 single nucleotide polymorphisms) genetic map. Composite interval mapping revealed a single quantitative trait locus (QTL), qClVIR-11, located on minichromosome 11, explaining 85% of the variability in virulence of the C. lentis population. The QTL covers a physical distance of 0.84 Mb with 98 genes, including seven candidate effector and two secondary metabolite genes. Taken together, the study provides genetic and physical evidence for the existence of a minichromosome controlling the C. lentis virulence on lentil
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|a Journal Article
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|a Research Support, Non-U.S. Gov't
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|a conditionally dispensable chromosomes
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|a disease resistance
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|a effectors
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| 650 |
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|a genomics
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| 650 |
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|a genotyping-by-whole-genome shotgun sequencing
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|a legumes
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|a pathogens
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|a MacLachlan, Ron
|e verfasserin
|4 aut
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|a Pozniak, Curtis
|e verfasserin
|4 aut
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|a Cohen-Skalie, Aurelie
|e verfasserin
|4 aut
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|a Li, Li
|e verfasserin
|4 aut
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|a Halliday, Jerlene
|e verfasserin
|4 aut
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|a Banniza, Sabine
|e verfasserin
|4 aut
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|i Enthalten in
|t The New phytologist
|d 1979
|g 221(2019), 1 vom: 04. Jan., Seite 431-445
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|x 1469-8137
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|g volume:221
|g year:2019
|g number:1
|g day:04
|g month:01
|g pages:431-445
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|u http://dx.doi.org/10.1111/nph.15369
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