Identification of major loci and genomic regions controlling acid and volatile content in tomato fruit implications for flavor improvement

Identification of major loci and genomic regions controlling acid and volatile content in tomato fruit : implications for flavor improvement

© 2017 INRA GAFL - Syngenta New Phytologist © 2017 New Phytologist Trust.

Bibliographische Detailangaben
Veröffentlicht in:The New phytologist. - 1979. - 215(2017), 2 vom: 20. Juli, Seite 624-641
1. Verfasser: Bauchet, Guillaume (VerfasserIn)
Weitere Verfasser: Grenier, Stéphane, Samson, Nicolas, Segura, Vincent, Kende, Aniko, Beekwilder, Jules, Cankar, Katarina, Gallois, Jean-Luc, Gricourt, Justine, Bonnet, Julien, Baxter, Charles, Grivet, Laurent, Causse, Mathilde
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2017
Zugriff auf das übergeordnete Werk:The New phytologist
Schlagworte:Journal Article flavor genome-wide association study (GWAS) genotype-by-environment (G × E) metabolites sugars : acids tomato breeding volatiles Malates Volatile Organic Compounds mehr... malic acid 817L1N4CKP Phenylethyl Alcohol ML9LGA7468
LEADER 01000naa a22002652 4500
001 NLM272655619
003 DE-627
005 20231224235333.0
007 cr uuu---uuuuu
008 231224s2017 xx |||||o 00| ||eng c
024 7 |a 10.1111/nph.14615  |2 doi 
028 5 2 |a pubmed24n0908.xml 
035 |a (DE-627)NLM272655619 
035 |a (NLM)28585324 
040 |a DE-627  |b ger  |c DE-627  |e rakwb 
041 |a eng 
100 1 |a Bauchet, Guillaume  |e verfasserin  |4 aut 
245 1 0 |a Identification of major loci and genomic regions controlling acid and volatile content in tomato fruit  |b implications for flavor improvement 
264 1 |c 2017 
336 |a Text  |b txt  |2 rdacontent 
337 |a ƒaComputermedien  |b c  |2 rdamedia 
338 |a ƒa Online-Ressource  |b cr  |2 rdacarrier 
500 |a Date Completed 11.04.2018 
500 |a Date Revised 07.12.2022 
500 |a published: Print-Electronic 
500 |a Citation Status MEDLINE 
520 |a © 2017 INRA GAFL - Syngenta New Phytologist © 2017 New Phytologist Trust. 
520 |a Plant metabolites are important to world food security due to their roles in crop yield and nutritional quality. Here we report the metabolic profile of 300 tomato accessions (Solanum lycopersicum and related wild species) by quantifying 60 primary and secondary metabolites, including volatile organic compounds, over a period of 2 yr. Metabolite content and genetic inheritance of metabolites varied broadly, both within and between different genetic groups. Using genotype information gained from 10 000 single nucleotide polymorphism markers, we performed a metabolite genome-wide association mapping (GWAS) study. We identified 79 associations influencing 13 primary and 19 secondary metabolites with large effects at high resolution. Four genome regions were detected, highlighting clusters of associations controlling the variation of several metabolites. Local linkage disequilibrium analysis and allele mining identified possible candidate genes which may modulate the content of metabolites that are of significant importance for human diet and fruit consumption. We precisely characterized two associations involved in fruit acidity and phenylpropanoid volatile production. Taken together, this study reveals complex and distinct metabolite regulation in tomato subspecies and demonstrates that GWAS is a powerful tool for gene-metabolite annotation and identification, pathways elucidation, and further crop improvement 
650 4 |a Journal Article 
650 4 |a flavor 
650 4 |a genome-wide association study (GWAS) 
650 4 |a genotype-by-environment (G × E) 
650 4 |a metabolites 
650 4 |a sugars : acids 
650 4 |a tomato breeding 
650 4 |a volatiles 
650 7 |a Malates  |2 NLM 
650 7 |a Volatile Organic Compounds  |2 NLM 
650 7 |a malic acid  |2 NLM 
650 7 |a 817L1N4CKP  |2 NLM 
650 7 |a Phenylethyl Alcohol  |2 NLM 
650 7 |a ML9LGA7468  |2 NLM 
700 1 |a Grenier, Stéphane  |e verfasserin  |4 aut 
700 1 |a Samson, Nicolas  |e verfasserin  |4 aut 
700 1 |a Segura, Vincent  |e verfasserin  |4 aut 
700 1 |a Kende, Aniko  |e verfasserin  |4 aut 
700 1 |a Beekwilder, Jules  |e verfasserin  |4 aut 
700 1 |a Cankar, Katarina  |e verfasserin  |4 aut 
700 1 |a Gallois, Jean-Luc  |e verfasserin  |4 aut 
700 1 |a Gricourt, Justine  |e verfasserin  |4 aut 
700 1 |a Bonnet, Julien  |e verfasserin  |4 aut 
700 1 |a Baxter, Charles  |e verfasserin  |4 aut 
700 1 |a Grivet, Laurent  |e verfasserin  |4 aut 
700 1 |a Causse, Mathilde  |e verfasserin  |4 aut 
773 0 8 |i Enthalten in  |t The New phytologist  |d 1979  |g 215(2017), 2 vom: 20. Juli, Seite 624-641  |w (DE-627)NLM09818248X  |x 1469-8137  |7 nnns 
773 1 8 |g volume:215  |g year:2017  |g number:2  |g day:20  |g month:07  |g pages:624-641 
856 4 0 |u http://dx.doi.org/10.1111/nph.14615  |3 Volltext 
912 |a GBV_USEFLAG_A 
912 |a SYSFLAG_A 
912 |a GBV_NLM 
912 |a GBV_ILN_350 
951 |a AR 
952 |d 215  |j 2017  |e 2  |b 20  |c 07  |h 624-641