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231224s2015 xx |||||o 00| ||eng c |
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|a 10.1111/nph.13004
|2 doi
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|a pubmed24n0806.xml
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|a (DE-627)NLM241789982
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|a (NLM)25209349
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|a DE-627
|b ger
|c DE-627
|e rakwb
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|a eng
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|a Beike, Anna K
|e verfasserin
|4 aut
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|a Insights from the cold transcriptome of Physcomitrella patens
|b global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation
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|c 2015
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|a Text
|b txt
|2 rdacontent
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|a ƒaComputermedien
|b c
|2 rdamedia
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|a ƒa Online-Ressource
|b cr
|2 rdacarrier
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|a Date Completed 24.08.2015
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|a Date Revised 21.03.2022
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|a published: Print-Electronic
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|a Citation Status MEDLINE
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|a © 2014 The Authors. New Phytologist © 2014 New Phytologist Trust.
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|a The whole-genome transcriptomic cold stress response of the moss Physcomitrella patens was analyzed and correlated with phenotypic and metabolic changes. Based on time-series microarray experiments and quantitative real-time polymerase chain reaction, we characterized the transcriptomic changes related to early stress signaling and the initiation of cold acclimation. Transcription-associated protein (TAP)-encoding genes of P. patens and Arabidopsis thaliana were classified using generalized linear models. Physiological responses were monitored with pulse-amplitude-modulated fluorometry, high-performance liquid chromatography and targeted high-performance mass spectrometry. The transcript levels of 3220 genes were significantly affected by cold. Comparative classification revealed a global specialization of TAP families, a transcript accumulation of transcriptional regulators of the stimulus/stress response and a transcript decline of developmental regulators. Although transcripts of the intermediate to later response are from evolutionarily conserved genes, the early response is dominated by species-specific genes. These orphan genes may encode as yet unknown acclimation processes
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|a Journal Article
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|a Research Support, Non-U.S. Gov't
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|a Physcomitrella patens
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|a abiotic stress
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|a abscisic acid (ABA)
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|a cold acclimation
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|a microarray
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|a moss
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|a orphan genes
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|a transcriptome
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|a Abscisic Acid
|2 NLM
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|a 72S9A8J5GW
|2 NLM
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|a Lang, Daniel
|e verfasserin
|4 aut
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|a Zimmer, Andreas D
|e verfasserin
|4 aut
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|a Wüst, Florian
|e verfasserin
|4 aut
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|a Trautmann, Danika
|e verfasserin
|4 aut
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|a Wiedemann, Gertrud
|e verfasserin
|4 aut
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|a Beyer, Peter
|e verfasserin
|4 aut
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|a Decker, Eva L
|e verfasserin
|4 aut
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|a Reski, Ralf
|e verfasserin
|4 aut
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|i Enthalten in
|t The New phytologist
|d 1979
|g 205(2015), 2 vom: 28. Jan., Seite 869-81
|w (DE-627)NLM09818248X
|x 1469-8137
|7 nnns
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|g volume:205
|g year:2015
|g number:2
|g day:28
|g month:01
|g pages:869-81
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|u http://dx.doi.org/10.1111/nph.13004
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