Preparation of sensitive and specific oligonucleotide probes tailed using terminal transferase and dITP

An oligonucleotide probe tailed with deoxyadenosine-5'-triphosphate or deoxythymine-5'-triphosphate is detectable with high sensitivity, but has a major drawback--the tail co-hybridizes specifically to complementary sequences. This can be a problem when screening cDNA clones that contain p...

Ausführliche Beschreibung

Bibliographische Detailangaben
Veröffentlicht in:BioTechniques. - 1988. - 28(2000), 3 vom: 14. März, Seite 486-90
1. Verfasser: Sugiyama, T (VerfasserIn)
Weitere Verfasser: Ishii, S, Saito, K, Yamamoto, J, Isogai, T, Ota, T
Format: Aufsatz
Sprache:English
Veröffentlicht: 2000
Zugriff auf das übergeordnete Werk:BioTechniques
Schlagworte:Journal Article Deoxyadenine Nucleotides Oligonucleotide Probes DNA Nucleotidylexotransferase EC 2.7.7.31 2'-deoxyadenosine triphosphate K8KCC8SH6N
LEADER 01000naa a22002652 4500
001 NLM106511246
003 DE-627
005 20231222141019.0
007 tu
008 231222s2000 xx ||||| 00| ||eng c
028 5 2 |a pubmed24n0355.xml 
035 |a (DE-627)NLM106511246 
035 |a (NLM)10723561 
040 |a DE-627  |b ger  |c DE-627  |e rakwb 
041 |a eng 
100 1 |a Sugiyama, T  |e verfasserin  |4 aut 
245 1 0 |a Preparation of sensitive and specific oligonucleotide probes tailed using terminal transferase and dITP 
264 1 |c 2000 
336 |a Text  |b txt  |2 rdacontent 
337 |a ohne Hilfsmittel zu benutzen  |b n  |2 rdamedia 
338 |a Band  |b nc  |2 rdacarrier 
500 |a Date Completed 27.04.2000 
500 |a Date Revised 28.09.2018 
500 |a published: Print 
500 |a Citation Status MEDLINE 
520 |a An oligonucleotide probe tailed with deoxyadenosine-5'-triphosphate or deoxythymine-5'-triphosphate is detectable with high sensitivity, but has a major drawback--the tail co-hybridizes specifically to complementary sequences. This can be a problem when screening cDNA clones that contain poly(dA) sequences. While it is possible to mask the cDNA tail with unlabeled poly(dA) or poly(A) oligonucleotides, false-positive clones are still produced because complete masking of extremely long (dA) tails is difficult. As a result, only cDNA clones that have extremely long poly(dA) sequences are often obtained by hybridization screening using tailed probes. In this report, we describe an oligonucleotide probe tailed with DIG-labeled nucleotide in combination with deoxyinosine-5'-triphosphate that was highly specific and sensitive to cDNAs. Terminal deoxynucleotidyl transferase efficiently adds dI nucleotides to the 3'-end. The dI of the tails did not pair with any nucleotides under stringent hybridization so that the specificity of hybridization assays remained high without affecting the sensitivity of the test. Colony hybridization experiments demonstrated that there were very few (1 of 80 tested) false positives using this technique. Its use may increase the accuracy of cDNA screening 
650 4 |a Journal Article 
650 7 |a Deoxyadenine Nucleotides  |2 NLM 
650 7 |a Oligonucleotide Probes  |2 NLM 
650 7 |a DNA Nucleotidylexotransferase  |2 NLM 
650 7 |a EC 2.7.7.31  |2 NLM 
650 7 |a 2'-deoxyadenosine triphosphate  |2 NLM 
650 7 |a K8KCC8SH6N  |2 NLM 
700 1 |a Ishii, S  |e verfasserin  |4 aut 
700 1 |a Saito, K  |e verfasserin  |4 aut 
700 1 |a Yamamoto, J  |e verfasserin  |4 aut 
700 1 |a Isogai, T  |e verfasserin  |4 aut 
700 1 |a Ota, T  |e verfasserin  |4 aut 
773 0 8 |i Enthalten in  |t BioTechniques  |d 1988  |g 28(2000), 3 vom: 14. März, Seite 486-90  |w (DE-627)NLM012627046  |x 1940-9818  |7 nnns 
773 1 8 |g volume:28  |g year:2000  |g number:3  |g day:14  |g month:03  |g pages:486-90 
912 |a GBV_USEFLAG_A 
912 |a SYSFLAG_A 
912 |a GBV_NLM 
912 |a GBV_ILN_21 
912 |a GBV_ILN_22 
912 |a GBV_ILN_39 
912 |a GBV_ILN_40 
912 |a GBV_ILN_50 
912 |a GBV_ILN_60 
912 |a GBV_ILN_62 
912 |a GBV_ILN_65 
912 |a GBV_ILN_70 
912 |a GBV_ILN_99 
912 |a GBV_ILN_121 
912 |a GBV_ILN_130 
912 |a GBV_ILN_227 
912 |a GBV_ILN_350 
912 |a GBV_ILN_618 
912 |a GBV_ILN_640 
912 |a GBV_ILN_754 
912 |a GBV_ILN_2001 
912 |a GBV_ILN_2002 
912 |a GBV_ILN_2003 
912 |a GBV_ILN_2005 
912 |a GBV_ILN_2006 
912 |a GBV_ILN_2007 
912 |a GBV_ILN_2008 
912 |a GBV_ILN_2009 
912 |a GBV_ILN_2010 
912 |a GBV_ILN_2012 
912 |a GBV_ILN_2015 
912 |a GBV_ILN_2018 
912 |a GBV_ILN_2023 
912 |a GBV_ILN_2035 
912 |a GBV_ILN_2040 
912 |a GBV_ILN_2060 
912 |a GBV_ILN_2099 
912 |a GBV_ILN_2105 
912 |a GBV_ILN_2121 
912 |a GBV_ILN_2470 
951 |a AR 
952 |d 28  |j 2000  |e 3  |b 14  |c 03  |h 486-90