|
|
|
|
| LEADER |
01000naa a22002652 4500 |
| 001 |
NLM377554898 |
| 003 |
DE-627 |
| 005 |
20240914233524.0 |
| 007 |
cr uuu---uuuuu |
| 008 |
240914s2024 xx |||||o 00| ||eng c |
| 024 |
7 |
|
|a 10.1093/jxb/erae385
|2 doi
|
| 028 |
5 |
2 |
|a pubmed24n1533.xml
|
| 035 |
|
|
|a (DE-627)NLM377554898
|
| 035 |
|
|
|a (NLM)39269014
|
| 035 |
|
|
|a (PII)erae385
|
| 040 |
|
|
|a DE-627
|b ger
|c DE-627
|e rakwb
|
| 041 |
|
|
|a eng
|
| 100 |
1 |
|
|a Pietrzyk, Peter
|e verfasserin
|4 aut
|
| 245 |
1 |
0 |
|a DIRT/µ - Automated extraction of root hair traits using combinatorial optimization
|
| 264 |
|
1 |
|c 2024
|
| 336 |
|
|
|a Text
|b txt
|2 rdacontent
|
| 337 |
|
|
|a ƒaComputermedien
|b c
|2 rdamedia
|
| 338 |
|
|
|a ƒa Online-Ressource
|b cr
|2 rdacarrier
|
| 500 |
|
|
|a Date Revised 13.09.2024
|
| 500 |
|
|
|a published: Print-Electronic
|
| 500 |
|
|
|a Citation Status Publisher
|
| 520 |
|
|
|a © The Author(s) 2024. Published by Oxford University Press on behalf of the Society for Experimental Biology.
|
| 520 |
|
|
|a Similar to any microscopic appendages, such as cilia or antennae, phenotyping of root hairs has been a challenge due to their complex intersecting arrangements in two-dimensional (2D) images and the technical limitations of automated measurements. Digital Imaging of Root Traits at Microscale (DIRT/μ) addresses this issue by computationally resolving intersections and extracting individual root hairs from 2D microscopy images. This solution enables automatic and precise trait measurements of individual root hairs. DIRT/μ rigorously defines a set of rules to resolve intersecting root hairs and minimizes a newly designed cost function to combinatorically identify each root hair in the microscopy image. As a result, DIRT/μ accurately measures traits such as root hair length (RHL) distribution and root hair density (RHD), which are impractical for manual assessment. We tested DIRT/μ on three datasets to validate its performance and showcase potential applications. By measuring root hair traits in a fraction of the time manual methods require, DIRT/μ eliminates subjective biases from manual measurements. Automating individual root hair extraction accelerates phenotyping and quantifies trait variability within and among plants, creating new possibilities to characterize root hair function and their underlying genetics
|
| 650 |
|
4 |
|a Journal Article
|
| 700 |
1 |
|
|a Phan-Udom, Neen
|e verfasserin
|4 aut
|
| 700 |
1 |
|
|a Chutoe, Chartinun
|e verfasserin
|4 aut
|
| 700 |
1 |
|
|a Pingault, Lise
|e verfasserin
|4 aut
|
| 700 |
1 |
|
|a Roy, Ankita
|e verfasserin
|4 aut
|
| 700 |
1 |
|
|a Libault, Marc
|e verfasserin
|4 aut
|
| 700 |
1 |
|
|a Johns Saengwilai, Patompong
|e verfasserin
|4 aut
|
| 700 |
1 |
|
|a Bucksch, Alexander
|e verfasserin
|4 aut
|
| 773 |
0 |
8 |
|i Enthalten in
|t Journal of experimental botany
|d 1985
|g (2024) vom: 12. Sept.
|w (DE-627)NLM098182706
|x 1460-2431
|7 nnns
|
| 773 |
1 |
8 |
|g year:2024
|g day:12
|g month:09
|
| 856 |
4 |
0 |
|u http://dx.doi.org/10.1093/jxb/erae385
|3 Volltext
|
| 912 |
|
|
|a GBV_USEFLAG_A
|
| 912 |
|
|
|a SYSFLAG_A
|
| 912 |
|
|
|a GBV_NLM
|
| 912 |
|
|
|a GBV_ILN_350
|
| 951 |
|
|
|a AR
|
| 952 |
|
|
|j 2024
|b 12
|c 09
|