$Construction and analysis of the tapping panel dryness-related lncRNA/circRNA-miRNA-mRNA ceRNA network in latex of Hevea brasiliensis$

Construction and analysis of the tapping panel dryness-related lncRNA/circRNA-miRNA-mRNA ceRNA network in latex of Hevea brasiliensis

Bibliographische Detailangaben
Veröffentlicht in:	Plant physiology and biochemistry : PPB. - 1991. - 205(2023) vom: 01. Dez., Seite 108156
1. Verfasser:	Liu, Hui (VerfasserIn)
Weitere Verfasser:	Yuan, Kun, Hu, Yiyu, Wang, Shuai, He, Qiguang, Feng, Chengtian, Liu, Jinping, Wang, Zhenhui
Format:	Online-Aufsatz
Sprache:	English
Veröffentlicht:	2023
Zugriff auf das übergeordnete Werk:	Plant physiology and biochemistry : PPB
Schlagworte:	Journal Article Circular RNA Competing endogenous RNA Hevea brasiliensis Long noncoding RNA Tapping panel dryness Transcriptome microRNA Latex RNA, Messenger mehr... RNA, Circular MicroRNAs RNA, Long Noncoding Plant Growth Regulators


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024	7		\|a 10.1016/j.plaphy.2023.108156 \|2 doi
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041			\|a eng
100	1		\|a Liu, Hui \|e verfasserin \|4 aut
245	1	0	\|a Construction and analysis of the tapping panel dryness-related lncRNA/circRNA-miRNA-mRNA ceRNA network in latex of Hevea brasiliensis
264		1	\|c 2023
336			\|a Text \|b txt \|2 rdacontent
337			\|a ƒaComputermedien \|b c \|2 rdamedia
338			\|a ƒa Online-Ressource \|b cr \|2 rdacarrier
500			\|a Date Completed 05.12.2023
500			\|a Date Revised 05.12.2023
500			\|a published: Print-Electronic
500			\|a Citation Status MEDLINE
520			\|a Copyright © 2023 Elsevier Masson SAS. All rights reserved.
520			\|a Tapping panel dryness (TPD) results in a severe reduction in latex yield in Hevea brasiliensis. However, the molecular regulatory mechanisms of TPD occurrence are still largely unclear. In this study, whole-transcriptome sequencing was carried out on latex from TPD and healthy trees. In total, 7078 long noncoding RNAs (lncRNAs), 3077 circular RNAs (circRNAs), 4956 miRNAs, and 25041 mRNAs were identified in latex, among which 435 lncRNAs, 68 circRNAs, 320 miRNAs, and 1574 mRNAs were differentially expressed in the latex of TPD trees. GO and KEGG analyses indicated that plant hormone signal transduction, MAPK signaling pathway, and ubiquitin-mediated proteolysis were the key pathways associated with TPD onset. Phytohormone profiling revealed significant changes in the contents of 28 hormonal compounds, among which ACC, ABA, IAA, GA, and JA contents were increased, while SA content was reduced in TPD latex, suggesting that hormone homeostasis is disrupted in TPD trees. Furthermore, we constructed a TPD-related competitive endogenous RNA (ceRNA) regulatory network of lncRNA/circRNA-miRNA-mRNA with 561 edges and 434 nodes (188 lncRNAs, 5 circRNAs, 191 miRNAs, and 50 mRNAs) and identified two hub lncRNAs (MSTRG.11908.1 and MSTRG.8791.1) and four hub miRNAs (hbr-miR156, miR156-x, miRf10477-y, and novel-m0452-3p). Notably, the lncRNA-miR156/157-SPL module containing three hubs probably plays a crucial role in TPD onset. The expression of network hubs and the lncRNA-miR156/157-SPL module were further validated by qRT-PCR. Our results reveal the TPD-associated ceRNA regulatory network of lncRNA/circRNA-miRNA-mRNA in latex and lay a foundation for further investigation of molecular regulatory mechanisms for TPD onset in H. brasiliensis
650		4	\|a Journal Article
650		4	\|a Circular RNA
650		4	\|a Competing endogenous RNA
650		4	\|a Hevea brasiliensis
650		4	\|a Long noncoding RNA
650		4	\|a Tapping panel dryness
650		4	\|a Transcriptome
650		4	\|a microRNA
650		7	\|a Latex \|2 NLM
650		7	\|a RNA, Messenger \|2 NLM
650		7	\|a RNA, Circular \|2 NLM
650		7	\|a MicroRNAs \|2 NLM
650		7	\|a RNA, Long Noncoding \|2 NLM
650		7	\|a Plant Growth Regulators \|2 NLM
700	1		\|a Yuan, Kun \|e verfasserin \|4 aut
700	1		\|a Hu, Yiyu \|e verfasserin \|4 aut
700	1		\|a Wang, Shuai \|e verfasserin \|4 aut
700	1		\|a He, Qiguang \|e verfasserin \|4 aut
700	1		\|a Feng, Chengtian \|e verfasserin \|4 aut
700	1		\|a Liu, Jinping \|e verfasserin \|4 aut
700	1		\|a Wang, Zhenhui \|e verfasserin \|4 aut
773	0	8	\|i Enthalten in \|t Plant physiology and biochemistry : PPB \|d 1991 \|g 205(2023) vom: 01. Dez., Seite 108156 \|w (DE-627)NLM098178261 \|x 1873-2690 \|7 nnns
773	1	8	\|g volume:205 \|g year:2023 \|g day:01 \|g month:12 \|g pages:108156
856	4	0	\|u http://dx.doi.org/10.1016/j.plaphy.2023.108156 \|3 Volltext
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952			\|d 205 \|j 2023 \|b 01 \|c 12 \|h 108156