GlobalAMFungi a global database of arbuscular mycorrhizal fungal occurrences from high-throughput sequencing metabarcoding studies

GlobalAMFungi : a global database of arbuscular mycorrhizal fungal occurrences from high-throughput sequencing metabarcoding studies

© 2023 The Authors. New Phytologist © 2023 New Phytologist Foundation.

Bibliographische Detailangaben
Veröffentlicht in:The New phytologist. - 1979. - 240(2023), 5 vom: 02. Dez., Seite 2151-2163
1. Verfasser: Větrovský, Tomáš (VerfasserIn)
Weitere Verfasser: Kolaříková, Zuzana, Lepinay, Clémentine, Awokunle Hollá, Sandra, Davison, John, Fleyberková, Anna, Gromyko, Anastasiia, Jelínková, Barbora, Kolařík, Miroslav, Krüger, Manuela, Lejsková, Renata, Michalčíková, Lenka, Michalová, Tereza, Moora, Mari, Moravcová, Andrea, Moulíková, Štěpánka, Odriozola, Iñaki, Öpik, Maarja, Pappová, Monika, Piché-Choquette, Sarah, Skřivánek, Jakub, Vlk, Lukáš, Zobel, Martin, Baldrian, Petr, Kohout, Petr
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2023
Zugriff auf das übergeordnete Werk:The New phytologist
Schlagworte:Journal Article arbuscular mycorrhizal fungi fungal biogeography fungal diversity glomeromycota glomeromycotina high-throughput sequencing
LEADER 01000naa a22002652 4500
001 NLM362777659
003 DE-627
005 20231226091940.0
007 cr uuu---uuuuu
008 231226s2023 xx |||||o 00| ||eng c
024 7 |a 10.1111/nph.19283  |2 doi 
028 5 2 |a pubmed24n1209.xml 
035 |a (DE-627)NLM362777659 
035 |a (NLM)37781910 
040 |a DE-627  |b ger  |c DE-627  |e rakwb 
041 |a eng 
100 1 |a Větrovský, Tomáš  |e verfasserin  |4 aut 
245 1 0 |a GlobalAMFungi  |b a global database of arbuscular mycorrhizal fungal occurrences from high-throughput sequencing metabarcoding studies 
264 1 |c 2023 
336 |a Text  |b txt  |2 rdacontent 
337 |a ƒaComputermedien  |b c  |2 rdamedia 
338 |a ƒa Online-Ressource  |b cr  |2 rdacarrier 
500 |a Date Completed 03.11.2023 
500 |a Date Revised 03.11.2023 
500 |a published: Print-Electronic 
500 |a Citation Status MEDLINE 
520 |a © 2023 The Authors. New Phytologist © 2023 New Phytologist Foundation. 
520 |a Arbuscular mycorrhizal (AM) fungi are crucial mutualistic symbionts of the majority of plant species, with essential roles in plant nutrient uptake and stress mitigation. The importance of AM fungi in ecosystems contrasts with our limited understanding of the patterns of AM fungal biogeography and the environmental factors that drive those patterns. This article presents a release of a newly developed global AM fungal dataset (GlobalAMFungi database, https://globalamfungi.com) that aims to reduce this knowledge gap. It contains almost 50 million observations of Glomeromycotinian AM fungal amplicon DNA sequences across almost 8500 samples with geographical locations and additional metadata obtained from 100 original studies. The GlobalAMFungi database is built on sequencing data originating from AM fungal taxon barcoding regions in: i) the small subunit rRNA (SSU) gene; ii) the internal transcribed spacer 2 (ITS2) region; and iii) the large subunit rRNA (LSU) gene. The GlobalAMFungi database is an open source and open access initiative that compiles the most comprehensive atlas of AM fungal distribution. It is designed as a permanent effort that will be continuously updated by its creators and through the collaboration of the scientific community. This study also documented applicability of the dataset to better understand ecology of AM fungal taxa 
650 4 |a Journal Article 
650 4 |a arbuscular mycorrhizal fungi 
650 4 |a fungal biogeography 
650 4 |a fungal diversity 
650 4 |a glomeromycota 
650 4 |a glomeromycotina 
650 4 |a high-throughput sequencing 
700 1 |a Kolaříková, Zuzana  |e verfasserin  |4 aut 
700 1 |a Lepinay, Clémentine  |e verfasserin  |4 aut 
700 1 |a Awokunle Hollá, Sandra  |e verfasserin  |4 aut 
700 1 |a Davison, John  |e verfasserin  |4 aut 
700 1 |a Fleyberková, Anna  |e verfasserin  |4 aut 
700 1 |a Gromyko, Anastasiia  |e verfasserin  |4 aut 
700 1 |a Jelínková, Barbora  |e verfasserin  |4 aut 
700 1 |a Kolařík, Miroslav  |e verfasserin  |4 aut 
700 1 |a Krüger, Manuela  |e verfasserin  |4 aut 
700 1 |a Lejsková, Renata  |e verfasserin  |4 aut 
700 1 |a Michalčíková, Lenka  |e verfasserin  |4 aut 
700 1 |a Michalová, Tereza  |e verfasserin  |4 aut 
700 1 |a Moora, Mari  |e verfasserin  |4 aut 
700 1 |a Moravcová, Andrea  |e verfasserin  |4 aut 
700 1 |a Moulíková, Štěpánka  |e verfasserin  |4 aut 
700 1 |a Odriozola, Iñaki  |e verfasserin  |4 aut 
700 1 |a Öpik, Maarja  |e verfasserin  |4 aut 
700 1 |a Pappová, Monika  |e verfasserin  |4 aut 
700 1 |a Piché-Choquette, Sarah  |e verfasserin  |4 aut 
700 1 |a Skřivánek, Jakub  |e verfasserin  |4 aut 
700 1 |a Vlk, Lukáš  |e verfasserin  |4 aut 
700 1 |a Zobel, Martin  |e verfasserin  |4 aut 
700 1 |a Baldrian, Petr  |e verfasserin  |4 aut 
700 1 |a Kohout, Petr  |e verfasserin  |4 aut 
773 0 8 |i Enthalten in  |t The New phytologist  |d 1979  |g 240(2023), 5 vom: 02. Dez., Seite 2151-2163  |w (DE-627)NLM09818248X  |x 1469-8137  |7 nnns 
773 1 8 |g volume:240  |g year:2023  |g number:5  |g day:02  |g month:12  |g pages:2151-2163 
856 4 0 |u http://dx.doi.org/10.1111/nph.19283  |3 Volltext 
912 |a GBV_USEFLAG_A 
912 |a SYSFLAG_A 
912 |a GBV_NLM 
912 |a GBV_ILN_350 
951 |a AR 
952 |d 240  |j 2023  |e 5  |b 02  |c 12  |h 2151-2163