Nanopore/Illumina Hybrid Whole-Genome Sequence Resource of Plenodomus lindquistii Strain US01 Infecting Sunflower
Plenodomus lindquistii (basionym: Leptosphaeria lindquistii) is the most prevalent fungus pathogen causing the black stem disease in sunflower. To date, only one whole-genome sequence is reported in NCBI, but no complete gene annotation has been submitted. Herein, we sequenced a Leptosphaeria lindqu...
| Publié dans: | Plant disease. - 1997. - 107(2023), 6 vom: 12. Juni, Seite 1929-1933 |
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| Auteur principal: | |
| Autres auteurs: | , , |
| Format: | Article en ligne |
| Langue: | English |
| Publié: |
2023
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| Accès à la collection: | Plant disease |
| Sujets: | Journal Article Leptosphaeria lindquistii Oxford Nanopore Technology genomics sunflower black stem |
| Résumé: | Plenodomus lindquistii (basionym: Leptosphaeria lindquistii) is the most prevalent fungus pathogen causing the black stem disease in sunflower. To date, only one whole-genome sequence is reported in NCBI, but no complete gene annotation has been submitted. Herein, we sequenced a Leptosphaeria lindquistii isolate from sunflower seeds imported from the United States using Oxford Nanopore long-read sequencing and Illumina short-read sequencing. We generated a 38.6-Mb genome assembly consisting of 29 contigs with an N50 of 1.689 Mb and a maximum length of 5.316 Mb. In the genome assembly, we identified 13,481 protein-coding genes, of which 12,531 were annotated. The high-quality assembly and annotation of the Leptosphaeria lindquistii genome will allow us to conduct further studies for the specific identification of pathogens causing sunflower black stem disease and provide a better understanding of the infection mechanisms of Leptosphaeria lindquistii |
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| Description: | Date Completed 28.06.2023 Date Revised 28.06.2023 published: Print-Electronic Citation Status MEDLINE |
| ISSN: | 0191-2917 |
| DOI: | 10.1094/PDIS-09-22-2055-A |