Whole-Genome Sequencing of Fusarium oxysporum f. sp. cucumerinum Strain Race-4 Infecting Cucumber in China

Whole-Genome Sequencing of Fusarium oxysporum f. sp. cucumerinum Strain Race-4 Infecting Cucumber in China

Fusarium oxysporum f. sp. cucumerinum, which causes root and vascular wilting, is one of the most devastating diseases infecting cucumber. Here, we report the first genome resource with high-quality assembly for F. oxysporum f. sp. cucumerinum strain Race-4, which is primarily endemic to China. The...

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Veröffentlicht in:Plant disease. - 1997. - 107(2023), 4 vom: 15. Apr., Seite 1210-1213
1. Verfasser: Yang, Jingjing (VerfasserIn)
Weitere Verfasser: Mao, Aijun, Zhang, Jian, Zhang, Xiaofei, Xia, Changxuan, Zhao, Hong, Wang, Yixin, Wen, Changlong, Liu, Hui, Wang, Qian
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2023
Zugriff auf das übergeordnete Werk:Plant disease
Schlagworte:Journal Article Fusarium oxysporum f. sp. cucumerinum cucumber Fusarium wilt gene annotation genome assembly race-4 Virulence Factors
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520 |a Fusarium oxysporum f. sp. cucumerinum, which causes root and vascular wilting, is one of the most devastating diseases infecting cucumber. Here, we report the first genome resource with high-quality assembly for F. oxysporum f. sp. cucumerinum strain Race-4, which is primarily endemic to China. The genome was 59.11 Mb in size and consisted of 48 scaffolds with an N50 of 3.87 Mb using PacBio long reads (301.77×) sequencing, and encodes 14,898 proteins from analyzing RNA-seq data. Gene annotations identified pathogen-host interaction genes, fungal virulence factors, secreted proteins, transcription factors, and secondary metabolite biosynthesis gene. Moreover, functional genes reported in previous studies were also identified in the genome of Race-4. These genes and genome resource may play important roles in understanding F. oxysporum f. sp. cucumerinum-cucumber interactions and will be useful for further research 
650 4 |a Journal Article 
650 4 |a Fusarium oxysporum f. sp. cucumerinum 
650 4 |a cucumber Fusarium wilt 
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700 1 |a Mao, Aijun  |e verfasserin  |4 aut 
700 1 |a Zhang, Jian  |e verfasserin  |4 aut 
700 1 |a Zhang, Xiaofei  |e verfasserin  |4 aut 
700 1 |a Xia, Changxuan  |e verfasserin  |4 aut 
700 1 |a Zhao, Hong  |e verfasserin  |4 aut 
700 1 |a Wang, Yixin  |e verfasserin  |4 aut 
700 1 |a Wen, Changlong  |e verfasserin  |4 aut 
700 1 |a Liu, Hui  |e verfasserin  |4 aut 
700 1 |a Wang, Qian  |e verfasserin  |4 aut 
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