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231226s2022 xx |||||o 00| ||eng c |
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|a 10.1093/jxb/erac285
|2 doi
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|a pubmed24n1142.xml
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|a (DE-627)NLM342838407
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|a (NLM)35762882
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|a DE-627
|b ger
|c DE-627
|e rakwb
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|a eng
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| 100 |
1 |
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|a Zhang, Baoyi
|e verfasserin
|4 aut
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| 245 |
1 |
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|a RiceNCexp
|b a rice non-coding RNA co-expression atlas based on massive RNA-seq and small-RNA seq data
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|c 2022
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|a Text
|b txt
|2 rdacontent
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|a ƒaComputermedien
|b c
|2 rdamedia
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|a ƒa Online-Ressource
|b cr
|2 rdacarrier
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|a Date Completed 20.10.2022
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|a Date Revised 21.10.2022
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|a published: Print
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|a Citation Status MEDLINE
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|a © The Author(s) 2022. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissionsoup.com.
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|a Non-coding RNAs (ncRNAs) play important roles in regulating expression of protein-coding genes. Although gene expression databases have emerged in a timely manner, a comprehensive expression database for ncRNAs is still lacking. Herein, we constructed a rice ncRNA co-expression atlas (RiceNCexp), based on 491 RNA-seq and 274 small RNA (sRNA)-seq datasets. RiceNCexp hosts four types of ncRNAs, namely lncRNAs, PHAS genes, miRNAs, and phasiRNAs. RiceNCexp provides comprehensive expression information for rice ncRNAs in 22 tissues/organs, an efficient tau-based mining tool for tissue-specific ncRNAs, and the robust co-expression analysis among ncRNAs or between ncRNAs and protein-coding genes, based on 116 pairs of RNA-seq and sRNA-seq libraries from the same experiments. In summary, RiceNCexp is a user-friendly and comprehensive rice ncRNA co-expression atlas and can be freely accessed at https://cbi.njau.edu.cn/RiceNCexp/
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|a Journal Article
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|a Research Support, Non-U.S. Gov't
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|a Co-expression
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|a RNA-seq
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|a database
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| 650 |
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|a non-coding RNA
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| 650 |
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|a rice
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| 650 |
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4 |
|a sRNA-seq
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| 650 |
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7 |
|a RNA, Long Noncoding
|2 NLM
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| 650 |
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|a RNA, Untranslated
|2 NLM
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| 650 |
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|a MicroRNAs
|2 NLM
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| 700 |
1 |
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|a Fei, Yuhan
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Feng, Jiejie
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Zhu, Xueai
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Wang, Rui
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Xiao, Hanqing
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Zhang, Hongsheng
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Huang, Ji
|e verfasserin
|4 aut
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| 773 |
0 |
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|i Enthalten in
|t Journal of experimental botany
|d 1985
|g 73(2022), 18 vom: 18. Okt., Seite 6068-6077
|w (DE-627)NLM098182706
|x 1460-2431
|7 nnns
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| 773 |
1 |
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|g volume:73
|g year:2022
|g number:18
|g day:18
|g month:10
|g pages:6068-6077
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| 856 |
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|u http://dx.doi.org/10.1093/jxb/erac285
|3 Volltext
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