Evolutionary divergence in embryo and seed coat development of U's Triangle Brassica species illustrated by a spatiotemporal transcriptome atlas

Evolutionary divergence in embryo and seed coat development of U's Triangle Brassica species illustrated by a spatiotemporal transcriptome atlas

© 2021 The Authors. New Phytologist © 2021 New Phytologist Foundation.

Bibliographische Detailangaben
Veröffentlicht in:The New phytologist. - 1979. - 233(2022), 1 vom: 01. Jan., Seite 30-51
1. Verfasser: Gao, Peng (VerfasserIn)
Weitere Verfasser: Quilichini, Teagen D, Yang, Hui, Li, Qiang, Nilsen, Kirby T, Qin, Li, Babic, Vivijan, Liu, Li, Cram, Dustin, Pasha, Asher, Esteban, Eddi, Condie, Janet, Sidebottom, Christine, Zhang, Yan, Huang, Yi, Zhang, Wentao, Bhowmik, Pankaj, Kochian, Leon V, Konkin, David, Wei, Yangdou, Provart, Nicholas J, Kagale, Sateesh, Smith, Mark, Patterson, Nii, Gillmor, C Stewart, Datla, Raju, Xiang, Daoquan
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2022
Zugriff auf das übergeordnete Werk:The New phytologist
Schlagworte:Journal Article Research Support, Non-U.S. Gov't Brassica embryogenesis evolution oilseed polyploid seed coat transcriptome
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520 |a The economically valuable Brassica species include the six related members of U's Triangle. Despite the agronomic and economic importance of these Brassicas, the impacts of evolution and relatively recent domestication events on the genetic landscape of seed development have not been comprehensively examined in these species. Here we present a 3D transcriptome atlas for the six species of U's Triangle, producing a unique resource that captures gene expression data for the major subcompartments of the seed, from the unfertilized ovule to the mature embryo and seed coat. This comprehensive dataset for seed development in tetraploid and ancestral diploid Brassicas provides new insights into evolutionary divergence and expression bias at the gene and subgenome levels during the domestication of these valued crop species. Comparisons of gene expression associated with regulatory networks and metabolic pathways operating in the embryo and seed coat during seed development reveal differences in storage reserve accumulation and fatty acid metabolism among the six Brassica species. This study illustrates the genetic underpinnings of seed traits and the selective pressures placed on seed production, providing an immense resource for continued investigation of Brassica polyploid biology, genomics and evolution 
650 4 |a Journal Article 
650 4 |a Research Support, Non-U.S. Gov't 
650 4 |a Brassica 
650 4 |a embryogenesis 
650 4 |a evolution 
650 4 |a oilseed 
650 4 |a polyploid 
650 4 |a seed coat 
650 4 |a transcriptome 
700 1 |a Quilichini, Teagen D  |e verfasserin  |4 aut 
700 1 |a Yang, Hui  |e verfasserin  |4 aut 
700 1 |a Li, Qiang  |e verfasserin  |4 aut 
700 1 |a Nilsen, Kirby T  |e verfasserin  |4 aut 
700 1 |a Qin, Li  |e verfasserin  |4 aut 
700 1 |a Babic, Vivijan  |e verfasserin  |4 aut 
700 1 |a Liu, Li  |e verfasserin  |4 aut 
700 1 |a Cram, Dustin  |e verfasserin  |4 aut 
700 1 |a Pasha, Asher  |e verfasserin  |4 aut 
700 1 |a Esteban, Eddi  |e verfasserin  |4 aut 
700 1 |a Condie, Janet  |e verfasserin  |4 aut 
700 1 |a Sidebottom, Christine  |e verfasserin  |4 aut 
700 1 |a Zhang, Yan  |e verfasserin  |4 aut 
700 1 |a Huang, Yi  |e verfasserin  |4 aut 
700 1 |a Zhang, Wentao  |e verfasserin  |4 aut 
700 1 |a Bhowmik, Pankaj  |e verfasserin  |4 aut 
700 1 |a Kochian, Leon V  |e verfasserin  |4 aut 
700 1 |a Konkin, David  |e verfasserin  |4 aut 
700 1 |a Wei, Yangdou  |e verfasserin  |4 aut 
700 1 |a Provart, Nicholas J  |e verfasserin  |4 aut 
700 1 |a Kagale, Sateesh  |e verfasserin  |4 aut 
700 1 |a Smith, Mark  |e verfasserin  |4 aut 
700 1 |a Patterson, Nii  |e verfasserin  |4 aut 
700 1 |a Gillmor, C Stewart  |e verfasserin  |4 aut 
700 1 |a Datla, Raju  |e verfasserin  |4 aut 
700 1 |a Xiang, Daoquan  |e verfasserin  |4 aut 
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