Discovery of new genetic determinants of morphological plasticity in rice roots and shoots under phosphate starvation using GWAS

Copyright © 2020 Elsevier GmbH. All rights reserved.

Détails bibliographiques
Publié dans:Journal of plant physiology. - 1979. - 257(2021) vom: 01. Feb., Seite 153340
Auteur principal: Mai, Nga T P (Auteur)
Autres auteurs: Mai, Chung Duc, Nguyen, Hiep Van, Le, Khang Quoc, Duong, Linh Viet, Tran, Tuan Anh, To, Huong Thi Mai
Format: Article en ligne
Langue:English
Publié: 2021
Accès à la collection:Journal of plant physiology
Sujets:Journal Article Genome-wide association study Genotyping-by-sequencing Phosphate deficiency Quantitative trait locus Rice cultivar Phosphates
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520 |a Phosphorus is an essential nutrient for plants that is often in short supply. In rice (Oryza sativa L.), inorganic phosphate (Pi) deficiency leads to various physiological disorders that consequently affect plant productivity. In this study, a large-scale phenotyping experiment using 160 Vietnamese rice landraces was performed under greenhouse conditions, by employing an alpha lattice design with three replicates, to identify quantitative trait loci (QTLs) associated with plant growth inhibition caused by Pi deficiency. Rice plantlets were grown for six weeks in the PVC sand column (16 cm diameter × 80 cm height) supplied with Pi-deficient medium (10 μM P) or full-Pi Yoshida medium (320 μM P). The effects of Pi deficiency on the number of crown roots, root length, shoot length, root weight, shoot weight and total weight were studied. From 36 significant markers identified using a genome-wide association study, 21 QTLs associated with plant growth inhibition under Pi starvation were defined. In total, 158 candidate genes co-located with the defined QTLs were identified. Interestingly, one QTL (qRST9.14) was associated with all three weight-traits. The co-located gene GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 13 was found to be potentially involved in Pi transport. Understanding the molecular mechanisms of Pi-starvation responses, and identifying the potential QTLs responsible for low-Pi stress tolerance, will provide valuable information for developing new varieties tolerant of low-Pi conditions 
650 4 |a Journal Article 
650 4 |a Genome-wide association study 
650 4 |a Genotyping-by-sequencing 
650 4 |a Phosphate deficiency 
650 4 |a Quantitative trait locus 
650 4 |a Rice cultivar 
650 7 |a Phosphates  |2 NLM 
700 1 |a Mai, Chung Duc  |e verfasserin  |4 aut 
700 1 |a Nguyen, Hiep Van  |e verfasserin  |4 aut 
700 1 |a Le, Khang Quoc  |e verfasserin  |4 aut 
700 1 |a Duong, Linh Viet  |e verfasserin  |4 aut 
700 1 |a Tran, Tuan Anh  |e verfasserin  |4 aut 
700 1 |a To, Huong Thi Mai  |e verfasserin  |4 aut 
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