Linkage-linkage disequilibrium dissection of the epigenetic quantitative trait loci (epiQTLs) underlying growth and wood properties in Populus

© 2019 The Authors New Phytologist © 2019 New Phytologist Trust.

Bibliographische Detailangaben
Veröffentlicht in:The New phytologist. - 1979. - 225(2020), 3 vom: 31. Feb., Seite 1218-1233
1. Verfasser: Lu, Wenjie (VerfasserIn)
Weitere Verfasser: Xiao, Liang, Quan, Mingyang, Wang, Qingshi, El-Kassaby, Yousry A, Du, Qingzhang, Zhang, Deqiang
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2020
Zugriff auf das übergeordnete Werk:The New phytologist
Schlagworte:Journal Article Research Support, Non-U.S. Gov't Populus association genetics eQTM eQTN epiQTL epigenetic map Genetic Markers
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520 |a Increasing evidence indicates that DNA methylation is heritable and serves as an essential marker contributing to phenotypic variation. Linkage-linkage disequilibrium mapping was used to decipher the epigenetic architecture underlying nine growth and wood property traits in a linkage population (550 F1 progeny) and a natural population (435 unrelated individuals) of Populus using methylation-sensitive amplification polymorphism (MSAP)-based analysis. The interactions between genetic and epigenetic variants in the causative genes was further unveiled using expression quantitative trait methylation (eQTM) and nucleotide (eQTN) mapping strategies. A total of 163 epigenetic quantitative trait loci (epiQTLs; LOD ≥ 3.0), explaining 1.7-44.5% of phenotypic variations, were mapped to a high-resolution epigenetic map with 19 linkage groups, which was supported by the significant MSAP associations (P < 0.001) in the two populations. There were 23 causal genes involved in growth regulation and wood formation, whose markers were located in epiQTLs and associated with the same traits in both populations. Further eQTN and eQTM mapping showed that causal genetic and epigenetic variants within the 23 candidate genes may interact more in trans in gene expression and phenotype. The present study provides strategies for investigating epigenetic architecture and the interaction between genetic and epigenetic variants modulating complex traits in forest trees 
650 4 |a Journal Article 
650 4 |a Research Support, Non-U.S. Gov't 
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650 4 |a association genetics 
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650 4 |a eQTN 
650 4 |a epiQTL 
650 4 |a epigenetic map 
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700 1 |a Xiao, Liang  |e verfasserin  |4 aut 
700 1 |a Quan, Mingyang  |e verfasserin  |4 aut 
700 1 |a Wang, Qingshi  |e verfasserin  |4 aut 
700 1 |a El-Kassaby, Yousry A  |e verfasserin  |4 aut 
700 1 |a Du, Qingzhang  |e verfasserin  |4 aut 
700 1 |a Zhang, Deqiang  |e verfasserin  |4 aut 
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