Reaction mechanism of NO with hydrolysates of NAMI-A : an MD simulation by combining the QM/MM(ABEEM) with the MD-FEP method

© 2018 Wiley Periodicals, Inc.

Détails bibliographiques
Publié dans:Journal of computational chemistry. - 1984. - 40(2019), 10 vom: 15. Apr., Seite 1141-1150
Auteur principal: Li, Hui (Auteur)
Autres auteurs: Wang, Di, Zhao, Xin, Lu, Li-Nan, Liu, Cui, Gong, Li-Dong, Zhao, Dong-Xia, Yang, Zhong-Zhi
Format: Article en ligne
Langue:English
Publié: 2019
Accès à la collection:Journal of computational chemistry
Sujets:Journal Article Research Support, Non-U.S. Gov't NAMI-A QM/MM(ABEEM) activation free energy hydrolysate nitrosylation spin states
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520 |a Nitrosylation reaction mechanisms of the hydrolysates of NAMI-A and hydrolysis reactions of ruthenium nitrosyl complexes were investigated in the triplet state and the singlet state. Activation free energies were calculated by combining the QM/MM(ABEEM) method with free energy perturbation theory, and the explicit solvent environment was simulated by an ABEEMσπ polarizable force field. Our results demonstrate that nitrosylation reactions of the hydrolysates of NAMI-A occur in both the triplet and the singlet states. The Ru-N-O angle of the triplet ruthenium nitrosyl complexes is in the range of 132.0°-138.2°. However, all the ruthenium nitrosyl complexes at the singlet state show an almost linear Ru-N-O angle. The nitrosylation reaction happens prior to the hydrolysis reaction for the first-step hydrolysates. The activation free energies of the nitrosylation reactions show that the H2 O-NO exchange reaction of [RuCl4 (Im)(H2 O)] in the singlet spin sate is the most likely one. Comparing with the activation free energies of the hydrolysis reactions of the ruthenium nitrosyl complexes, the results indicate that the rate of the DMSO-H2 O exchange reaction of [RuCl3 (NO)(Im)(DMSO)] is faster than that of [RuCl3 (H2 O)(Im)(DMSO)] in both the triplet spin state and the singlet spin state. © 2018 Wiley Periodicals, Inc 
650 4 |a Journal Article 
650 4 |a Research Support, Non-U.S. Gov't 
650 4 |a NAMI-A 
650 4 |a QM/MM(ABEEM) 
650 4 |a activation free energy 
650 4 |a hydrolysate 
650 4 |a nitrosylation 
650 4 |a spin states 
700 1 |a Wang, Di  |e verfasserin  |4 aut 
700 1 |a Zhao, Xin  |e verfasserin  |4 aut 
700 1 |a Lu, Li-Nan  |e verfasserin  |4 aut 
700 1 |a Liu, Cui  |e verfasserin  |4 aut 
700 1 |a Gong, Li-Dong  |e verfasserin  |4 aut 
700 1 |a Zhao, Dong-Xia  |e verfasserin  |4 aut 
700 1 |a Yang, Zhong-Zhi  |e verfasserin  |4 aut 
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