Genome-wide association study reveals new loci involved in Arabidopsis thaliana and Turnip mosaic virus (TuMV) interactions in the field

© 2018 INRA New Phytologist © 2018 New Phytologist Trust.

Bibliographische Detailangaben
Veröffentlicht in:The New phytologist. - 1979. - 221(2019), 4 vom: 03. März, Seite 2026-2038
1. Verfasser: Rubio, Bernadette (VerfasserIn)
Weitere Verfasser: Cosson, Patrick, Caballero, Mélodie, Revers, Frédéric, Bergelson, Joy, Roux, Fabrice, Schurdi-Levraud, Valérie
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2019
Zugriff auf das übergeordnete Werk:The New phytologist
Schlagworte:Journal Article Research Support, Non-U.S. Gov't Arabidopsis thaliana Turnip mosaic virus (TuMV) candidate genes field experiment genetic architecture genome-wide association mapping virus
LEADER 01000naa a22002652 4500
001 NLM289176441
003 DE-627
005 20231225061956.0
007 cr uuu---uuuuu
008 231225s2019 xx |||||o 00| ||eng c
024 7 |a 10.1111/nph.15507  |2 doi 
028 5 2 |a pubmed24n0963.xml 
035 |a (DE-627)NLM289176441 
035 |a (NLM)30282123 
040 |a DE-627  |b ger  |c DE-627  |e rakwb 
041 |a eng 
100 1 |a Rubio, Bernadette  |e verfasserin  |4 aut 
245 1 0 |a Genome-wide association study reveals new loci involved in Arabidopsis thaliana and Turnip mosaic virus (TuMV) interactions in the field 
264 1 |c 2019 
336 |a Text  |b txt  |2 rdacontent 
337 |a ƒaComputermedien  |b c  |2 rdamedia 
338 |a ƒa Online-Ressource  |b cr  |2 rdacarrier 
500 |a Date Completed 14.01.2020 
500 |a Date Revised 30.09.2020 
500 |a published: Print-Electronic 
500 |a Citation Status MEDLINE 
520 |a © 2018 INRA New Phytologist © 2018 New Phytologist Trust. 
520 |a The genetic architecture of plant response to viruses has often been studied in model nonnatural pathosystems under controlled conditions. There is an urgent need to elucidate the genetic architecture of the response to viruses in a natural setting. A field experiment was performed in each of two years. In total, 317 Arabidopsis thaliana accessions were inoculated with its natural Turnip mosaic virus (TuMV). The accessions were phenotyped for viral accumulation, frequency of infected plants, stem length and symptoms. Genome-wide association mapping was performed. Arabidopsis thaliana exhibits extensive natural variation in its response to TuMV in the field. The underlying genetic architecture reveals a more quantitative picture than in controlled conditions. Ten genomic regions were consistently identified across the two years. RTM3 (Restricted TEV Movement 3) is a major candidate for the response to TuMV in the field. New candidate genes include Dead box helicase 1, a Tim Barrel domain protein and the eukaryotic translation initiation factor eIF3b. To our knowledge, this study is the first to report the genetic architecture of quantitative response of A. thaliana to a naturally occurring virus in a field environment, thereby highlighting relevant candidate genes involved in plant virus interactions in nature 
650 4 |a Journal Article 
650 4 |a Research Support, Non-U.S. Gov't 
650 4 |a Arabidopsis thaliana 
650 4 |a Turnip mosaic virus (TuMV) 
650 4 |a candidate genes 
650 4 |a field experiment 
650 4 |a genetic architecture 
650 4 |a genome-wide association mapping 
650 4 |a virus 
700 1 |a Cosson, Patrick  |e verfasserin  |4 aut 
700 1 |a Caballero, Mélodie  |e verfasserin  |4 aut 
700 1 |a Revers, Frédéric  |e verfasserin  |4 aut 
700 1 |a Bergelson, Joy  |e verfasserin  |4 aut 
700 1 |a Roux, Fabrice  |e verfasserin  |4 aut 
700 1 |a Schurdi-Levraud, Valérie  |e verfasserin  |4 aut 
773 0 8 |i Enthalten in  |t The New phytologist  |d 1979  |g 221(2019), 4 vom: 03. März, Seite 2026-2038  |w (DE-627)NLM09818248X  |x 1469-8137  |7 nnns 
773 1 8 |g volume:221  |g year:2019  |g number:4  |g day:03  |g month:03  |g pages:2026-2038 
856 4 0 |u http://dx.doi.org/10.1111/nph.15507  |3 Volltext 
912 |a GBV_USEFLAG_A 
912 |a SYSFLAG_A 
912 |a GBV_NLM 
912 |a GBV_ILN_350 
951 |a AR 
952 |d 221  |j 2019  |e 4  |b 03  |c 03  |h 2026-2038