Identification of jumonjiC domain containing gene family among the Oryza species and their expression analysis in FL478, a salt tolerant rice genotype

Copyright © 2018 Elsevier Masson SAS. All rights reserved.

Détails bibliographiques
Publié dans:Plant physiology and biochemistry : PPB. - 1991. - 130(2018) vom: 15. Sept., Seite 43-53
Auteur principal: Chowrasia, Soni (Auteur)
Autres auteurs: Panda, Alok Kumar, Rawal, Hukam C, Kaur, Harmeet, Mondal, Tapan Kumar
Format: Article en ligne
Langue:English
Publié: 2018
Accès à la collection:Plant physiology and biochemistry : PPB
Sujets:Journal Article Abiotic stress Evolution Histone modification Rice Salinity stress Plant Proteins Jumonji Domain-Containing Histone Demethylases EC 1.14.11.-
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245 1 0 |a Identification of jumonjiC domain containing gene family among the Oryza species and their expression analysis in FL478, a salt tolerant rice genotype 
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520 |a The jumonji (JMJ)-C domain containing proteins belong to histone demethylases family with the ability to demethylate the tri-methylated histone residues. They act as chromatin regulators to regulate many physiological functions in plants. The present study deals with the characterization of JMJ-C gene family members in wild as well as cultivated rice species and their expression analysis in salt tolerant rice genotype, FL478. The genome wide study identified 151 members belonging to JMJ-C gene family in 11 different Oryza species. We also studied their structure, genomic location, gene duplication events, phylogenetic relationship, in silico expression analysis and identified cis elements in their promoters. We also found a few JMJ-C gene family members in rice which underwent duplication before the whole genome duplication event of the rice. The qRT-PCR based expression profiling revealed that out of the total 15 rice JMJ-C members, two were highly expressed in the flag leaf stage of FL478 under salt treatment. These two candidate JMJ-C members were also found to render salinity tolerance when over-expressed in yeast cells. Thus, the present study helps in further structural as well as functional characterization of JMJ-C genes under salinity stress in Oryza species 
650 4 |a Journal Article 
650 4 |a Abiotic stress 
650 4 |a Evolution 
650 4 |a Histone modification 
650 4 |a Rice 
650 4 |a Salinity stress 
650 7 |a Plant Proteins  |2 NLM 
650 7 |a Jumonji Domain-Containing Histone Demethylases  |2 NLM 
650 7 |a EC 1.14.11.-  |2 NLM 
700 1 |a Panda, Alok Kumar  |e verfasserin  |4 aut 
700 1 |a Rawal, Hukam C  |e verfasserin  |4 aut 
700 1 |a Kaur, Harmeet  |e verfasserin  |4 aut 
700 1 |a Mondal, Tapan Kumar  |e verfasserin  |4 aut 
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