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231225s2018 xx |||||o 00| ||eng c |
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|a 10.1093/jxb/erx254
|2 doi
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|a pubmed24n0922.xml
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|a (DE-627)NLM276613341
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|a (NLM)28992117
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|a DE-627
|b ger
|c DE-627
|e rakwb
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| 041 |
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|a eng
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| 100 |
1 |
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|a Cherenkov, Pavel
|e verfasserin
|4 aut
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| 245 |
1 |
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|a Diversity of cis-regulatory elements associated with auxin response in Arabidopsis thaliana
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|c 2018
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| 336 |
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|a Text
|b txt
|2 rdacontent
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|a ƒaComputermedien
|b c
|2 rdamedia
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| 338 |
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|a ƒa Online-Ressource
|b cr
|2 rdacarrier
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|a Date Completed 04.02.2019
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|a Date Revised 15.02.2019
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|a published: Print
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|a Citation Status MEDLINE
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| 520 |
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|a © The Author(s) 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.
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| 520 |
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|a The phytohormone auxin regulates virtually every developmental process in land plants. This regulation is mediated via de-repression of DNA-binding auxin response factors (ARFs). ARFs bind TGTC-containing auxin response cis-elements (AuxREs), but there is growing evidence that additional cis-elements occur in auxin-responsive regulatory regions. The repertoire of auxin-related cis-elements and their involvement in different modes of auxin response are not yet known. Here we analyze the enrichment of nucleotide hexamers in upstream regions of auxin-responsive genes associated with auxin up- or down-regulation, with early or late response, ARF-binding domains, and with different chromatin states. Intriguingly, hexamers potentially bound by basic helix-loop-helix (bHLH) and basic leucine zipper (bZIP) factors as well as a family of A/T-rich hexamers are more highly enriched in auxin-responsive regions than canonical TGTC-containing AuxREs. We classify and annotate the whole spectrum of enriched hexamers and discuss their patterns of enrichment related to different modes of auxin response
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4 |
|a Journal Article
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| 650 |
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4 |
|a Research Support, Non-U.S. Gov't
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| 650 |
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4 |
|a Review
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| 650 |
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4 |
|a ARF
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| 650 |
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4 |
|a AuxRE
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| 650 |
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4 |
|a Auxin
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| 650 |
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4 |
|a bHLH
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| 650 |
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4 |
|a bZIP
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| 650 |
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4 |
|a bioinformatics
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| 650 |
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4 |
|a chromatin states
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| 650 |
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4 |
|a transcriptional regulation
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| 650 |
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7 |
|a Chromatin
|2 NLM
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| 650 |
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7 |
|a Indoleacetic Acids
|2 NLM
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| 650 |
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7 |
|a Plant Growth Regulators
|2 NLM
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| 650 |
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7 |
|a Transcription Factors
|2 NLM
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| 700 |
1 |
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|a Novikova, Daria
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Omelyanchuk, Nadya
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Levitsky, Victor
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Grosse, Ivo
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Weijers, Dolf
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Mironova, Victoria
|e verfasserin
|4 aut
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| 773 |
0 |
8 |
|i Enthalten in
|t Journal of experimental botany
|d 1985
|g 69(2018), 2 vom: 04. Jan., Seite 329-339
|w (DE-627)NLM098182706
|x 1460-2431
|7 nnns
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| 773 |
1 |
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|g volume:69
|g year:2018
|g number:2
|g day:04
|g month:01
|g pages:329-339
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| 856 |
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|u http://dx.doi.org/10.1093/jxb/erx254
|3 Volltext
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|a GBV_ILN_350
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|a AR
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|d 69
|j 2018
|e 2
|b 04
|c 01
|h 329-339
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