Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways

© The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Bibliographische Detailangaben
Veröffentlicht in:Journal of experimental botany. - 1985. - 67(2016), 21 vom: 01. Nov., Seite 6037-6049
1. Verfasser: Fei, Qili (VerfasserIn)
Weitere Verfasser: Yang, Li, Liang, Wanqi, Zhang, Dabing, Meyers, Blake C
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2016
Zugriff auf das übergeordnete Werk:Journal of experimental botany
Schlagworte:Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Anther Argonaute microRNA phasiRNA rice spikelet. Argonaute Proteins mehr... MicroRNAs RNA, Plant RNA, Small Interfering
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500 |a Date Completed 13.11.2017 
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500 |a published: Print-Electronic 
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520 |a © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology. 
520 |a Dissection of the genetic pathways and mechanisms by which anther development occurs in grasses is crucial for both a basic understanding of plant development and for examining traits of agronomic importance such as male sterility. In rice, MULTIPLE SPOROCYTES1 (MSP1), a leucine-rich-repeat receptor kinase, plays an important role in anther development by limiting the number of sporocytes. OsTDL1a (a TPD1-like gene in rice) encodes a small protein that acts as a cofactor of MSP1 in the same regulatory pathway. In this study, we analyzed small RNA and mRNA changes in different stages of spikelets from wild-type rice, and from msp1 and ostdl1a mutants. Analysis of the small RNA data identified miRNAs demonstrating differential abundances. miR2275 was depleted in the two rice mutants; this miRNA is specifically enriched in anthers and functions to trigger the production of 24-nt phased secondary siRNAs (phasiRNAs) from PHAS loci. We observed that the 24-nt phasiRNAs as well as their precursor PHAS mRNAs were also depleted in the two mutants. An analysis of co-expression identified three Argonaute-encoding genes (OsAGO1d, OsAGO2b, and OsAGO18) that accumulate transcripts coordinately with phasiRNAs, suggesting a functional relationship. By mRNA in situ analysis, we demonstrated a strong correlation between the spatiotemporal pattern of these OsAGO transcripts and phasiRNA accumulations 
650 4 |a Journal Article 
650 4 |a Research Support, Non-U.S. Gov't 
650 4 |a Research Support, U.S. Gov't, Non-P.H.S. 
650 4 |a Anther 
650 4 |a Argonaute 
650 4 |a microRNA 
650 4 |a phasiRNA 
650 4 |a rice 
650 4 |a spikelet. 
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650 7 |a MicroRNAs  |2 NLM 
650 7 |a RNA, Plant  |2 NLM 
650 7 |a RNA, Small Interfering  |2 NLM 
700 1 |a Yang, Li  |e verfasserin  |4 aut 
700 1 |a Liang, Wanqi  |e verfasserin  |4 aut 
700 1 |a Zhang, Dabing  |e verfasserin  |4 aut 
700 1 |a Meyers, Blake C  |e verfasserin  |4 aut 
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