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231224s2016 xx |||||o 00| ||eng c |
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|a 10.1016/j.plantsci.2016.01.011
|2 doi
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|a pubmed25n0861.xml
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|a (DE-627)NLM258578769
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|a (NLM)26993236
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|a (PII)S0168-9452(16)30011-5
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|a DE-627
|b ger
|c DE-627
|e rakwb
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|a eng
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| 100 |
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|a da Fonseca, Guilherme Cordenonsi
|e verfasserin
|4 aut
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| 245 |
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|a Unusual RNA plant virus integration in the soybean genome leads to the production of small RNAs
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|c 2016
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|a Text
|b txt
|2 rdacontent
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|a ƒaComputermedien
|b c
|2 rdamedia
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| 338 |
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|a ƒa Online-Ressource
|b cr
|2 rdacarrier
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|a Date Completed 14.12.2016
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|a Date Revised 13.12.2023
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|a published: Print-Electronic
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|a Citation Status MEDLINE
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| 520 |
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|a Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.
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|a Horizontal gene transfer (HGT) is known to be a major force in genome evolution. The acquisition of genes from viruses by eukaryotic genomes is a well-studied example of HGT, including rare cases of non-retroviral RNA virus integration. The present study describes the integration of cucumber mosaic virus RNA-1 into soybean genome. After an initial metatranscriptomic analysis of small RNAs derived from soybean, the de novo assembly resulted a 3029-nt contig homologous to RNA-1. The integration of this sequence in the soybean genome was confirmed by DNA deep sequencing. The locus where the integration occurred harbors the full RNA-1 sequence followed by the partial sequence of an endogenous mRNA and another sequence of RNA-1 as an inverted repeat and allowing the formation of a hairpin structure. This region recombined into a retrotransposon located inside an exon of a soybean gene. The nucleotide similarity of the integrated sequence compared to other Cucumber mosaic virus sequences indicates that the integration event occurred recently. We described a rare event of non-retroviral RNA virus integration in soybean that leads to the production of a double-stranded RNA in a similar fashion to virus resistance RNAi plants
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|a Journal Article
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|a Research Support, Non-U.S. Gov't
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4 |
|a Cucumber mosaic virus
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| 650 |
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4 |
|a Horizontal gene transfer
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| 650 |
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|a RNA plant virus
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|a Soybean
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4 |
|a Transposon
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| 650 |
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|a RNA, Messenger
|2 NLM
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| 650 |
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|a RNA, Plant
|2 NLM
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| 700 |
1 |
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|a de Oliveira, Luiz Felipe Valter
|e verfasserin
|4 aut
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| 700 |
1 |
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|a de Morais, Guilherme Loss
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Abdelnor, Ricardo Vilela
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Nepomuceno, Alexandre Lima
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Waterhouse, Peter M
|e verfasserin
|4 aut
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| 700 |
1 |
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|a Farinelli, Laurent
|e verfasserin
|4 aut
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| 700 |
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|a Margis, Rogerio
|e verfasserin
|4 aut
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| 773 |
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|i Enthalten in
|t Plant science : an international journal of experimental plant biology
|d 1985
|g 246(2016) vom: 15. Mai, Seite 62-69
|w (DE-627)NLM098174193
|x 1873-2259
|7 nnns
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| 773 |
1 |
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|g volume:246
|g year:2016
|g day:15
|g month:05
|g pages:62-69
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|u http://dx.doi.org/10.1016/j.plantsci.2016.01.011
|3 Volltext
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|d 246
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|b 15
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|h 62-69
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