The interaction between iron nutrition, plant species and soil type shapes the rhizosphere microbiome

Copyright © 2015 Elsevier Masson SAS. All rights reserved.

Bibliographische Detailangaben
Veröffentlicht in:Plant physiology and biochemistry : PPB. - 1991. - 99(2016) vom: 25. Feb., Seite 39-48
1. Verfasser: Pii, Youry (VerfasserIn)
Weitere Verfasser: Borruso, Luigimaria, Brusetti, Lorenzo, Crecchio, Carmine, Cesco, Stefano, Mimmo, Tanja
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2016
Zugriff auf das übergeordnete Werk:Plant physiology and biochemistry : PPB
Schlagworte:Journal Article Research Support, Non-U.S. Gov't Barley Fe deficiency PGPR Pyrosequencing Rhizosphere metagenome Tomato Soil Iron E1UOL152H7
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520 |a Plant-associated microorganisms can stimulate plants growth and influence both crops yield and quality by nutrient mobilization and transport. Therefore, rhizosphere microbiome appears to be one of the key determinants of plant health and productivity. The roots of plants have the ability to influence its surrounding microbiology, the rhizosphere microbiome, through the creation of specific chemical niches in the soil mediated by the release of phytochemicals (i.e. root exudates) that depends on several factors, such as plants genotype, soil properties, plant nutritional status, climatic conditions. In the present research, two different crop species, namely barley and tomato, characterized by different strategies for Fe acquisition, have been grown in the RHIZOtest system using either complete or Fe-free nutrient solution to induce Fe starvation. Afterward, plants were cultivated for 6 days on two different calcareous soils. Total DNA was extracted from rhizosphere and bulk soil and 454 pyrosequencing technology was applied to V1-V3 16S rRNA gene region. Approximately 5000 sequences were obtained for each sample. The analysis of the bacterial population confirmed that the two bulk soils showed a different microbial community. The presence of the two plant species, as well as the nutritional status (Fe-deficiency and Fe-sufficiency), could promote a differentiation of the rhizosphere microbiome, as highlighted by non-metric multidimensional scaling (NMDS) analysis. Alphaproteobacteria, Actinobacteria, Chloracidobacteria, Thermoleophilia, Betaproteobacteria, Saprospirae, Gemmatimonadetes, Gammaproteobacteria, Acidobacteria were the most represented classes in all the samples analyzed even though their relative abundance changed as a function of the soil, plant species and nutritional status. To our knowledge, this research demonstrate for the first time that different plants species with a diverse nutritional status can promote the development of a peculiar rhizosphere microbiome, depending on the growth substrate 
650 4 |a Journal Article 
650 4 |a Research Support, Non-U.S. Gov't 
650 4 |a Barley 
650 4 |a Fe deficiency 
650 4 |a PGPR 
650 4 |a Pyrosequencing 
650 4 |a Rhizosphere metagenome 
650 4 |a Tomato 
650 7 |a Soil  |2 NLM 
650 7 |a Iron  |2 NLM 
650 7 |a E1UOL152H7  |2 NLM 
700 1 |a Borruso, Luigimaria  |e verfasserin  |4 aut 
700 1 |a Brusetti, Lorenzo  |e verfasserin  |4 aut 
700 1 |a Crecchio, Carmine  |e verfasserin  |4 aut 
700 1 |a Cesco, Stefano  |e verfasserin  |4 aut 
700 1 |a Mimmo, Tanja  |e verfasserin  |4 aut 
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