Next generation sequencing and omics in cucumber (Cucumis sativus L.) breeding directed research

Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Bibliographische Detailangaben
Veröffentlicht in:Plant science : an international journal of experimental plant biology. - 1985. - 242(2016) vom: 13. Jan., Seite 77-88
1. Verfasser: Pawełkowicz, Magdalena (VerfasserIn)
Weitere Verfasser: Zieliński, Konrad, Zielińska, Dorota, Pląder, Wojciech, Yagi, Kouhei, Wojcieszek, Michał, Siedlecka, Ewa, Bartoszewski, Grzegorz, Skarzyńska, Agnieszka, Przybecki, Zbigniew
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2016
Zugriff auf das übergeordnete Werk:Plant science : an international journal of experimental plant biology
Schlagworte:Journal Article Research Support, U.S. Gov't, Non-P.H.S. Review BAC-FISH Cucumis sativus L. Mitochondriomics NGS Plastomics Reverse genetics TILLinG
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520 |a In the post-genomic era the availability of genomic tools and resources is leading us to novel generation methods in plant breeding, as they facilitate the study of the genotype and its relationship with the phenotype, in particular for complex traits. In this study we have mainly concentrated on the Cucumis sativus and (but much less) Cucurbitaceae family several important vegetable crops. There are many reports on research conducted in Cucurbitaceae plant breeding programs on the ripening process, phloem transport, disease resistance, cold tolerance and fruit quality traits. This paper presents the role played by new omic technologies in the creation of knowledge on the mechanisms of the formation of the breeding features. The analysis of NGS (NGS-next generation sequencing) data allows the discovery of new genes and regulatory sequences, their positions, and makes available large collections of molecular markers. Genome-wide expression studies provide breeders with an understanding of the molecular basis of complex traits. Firstly a high density map should be created for the reference genome, then each re-sequencing data could be mapped and new markers brought out into breeding populations. The paper also presents methods that could be used in the future for the creation of variability and genomic modification of the species in question. It has been shown also the state and usefulness in breeding the chloroplastomic and mitochondriomic study 
650 4 |a Journal Article 
650 4 |a Research Support, U.S. Gov't, Non-P.H.S. 
650 4 |a Review 
650 4 |a BAC-FISH 
650 4 |a Cucumis sativus L. 
650 4 |a Mitochondriomics 
650 4 |a NGS 
650 4 |a Plastomics 
650 4 |a Reverse genetics 
650 4 |a TILLinG 
700 1 |a Zieliński, Konrad  |e verfasserin  |4 aut 
700 1 |a Zielińska, Dorota  |e verfasserin  |4 aut 
700 1 |a Pląder, Wojciech  |e verfasserin  |4 aut 
700 1 |a Yagi, Kouhei  |e verfasserin  |4 aut 
700 1 |a Wojcieszek, Michał  |e verfasserin  |4 aut 
700 1 |a Siedlecka, Ewa  |e verfasserin  |4 aut 
700 1 |a Bartoszewski, Grzegorz  |e verfasserin  |4 aut 
700 1 |a Skarzyńska, Agnieszka  |e verfasserin  |4 aut 
700 1 |a Przybecki, Zbigniew  |e verfasserin  |4 aut 
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