The Plant Genome Integrative Explorer Resource PlantGenIE.org

The Plant Genome Integrative Explorer Resource : PlantGenIE.org

© 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Bibliographische Detailangaben
Veröffentlicht in:The New phytologist. - 1979. - 208(2015), 4 vom: 15. Dez., Seite 1149-56
1. Verfasser: Sundell, David (VerfasserIn)
Weitere Verfasser: Mannapperuma, Chanaka, Netotea, Sergiu, Delhomme, Nicolas, Lin, Yao-Cheng, Sjödin, Andreas, Van de Peer, Yves, Jansson, Stefan, Hvidsten, Torgeir R, Street, Nathaniel R
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2015
Zugriff auf das übergeordnete Werk:The New phytologist
Schlagworte:Journal Article Research Support, Non-U.S. Gov't Populus annotation coexpression conifer database genome browser transcriptomics web resource RNA, Plant
Beschreibung
Zusammenfassung:© 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.
Accessing and exploring large-scale genomics data sets remains a significant challenge to researchers without specialist bioinformatics training. We present the integrated PlantGenIE.org platform for exploration of Populus, conifer and Arabidopsis genomics data, which includes expression networks and associated visualization tools. Standard features of a model organism database are provided, including genome browsers, gene list annotation, Blast homology searches and gene information pages. Community annotation updating is supported via integration of WebApollo. We have produced an RNA-sequencing (RNA-Seq) expression atlas for Populus tremula and have integrated these data within the expression tools. An updated version of the ComPlEx resource for performing comparative plant expression analyses of gene coexpression network conservation between species has also been integrated. The PlantGenIE.org platform provides intuitive access to large-scale and genome-wide genomics data from model forest tree species, facilitating both community contributions to annotation improvement and tools supporting use of the included data resources to inform biological insight
Beschreibung:Date Completed 06.09.2016
Date Revised 08.04.2022
published: Print-Electronic
Citation Status MEDLINE
ISSN:1469-8137
DOI:10.1111/nph.13557