Towards recommendations for metadata and data handling in plant phenotyping

Towards recommendations for metadata and data handling in plant phenotyping

© The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissionsoup.com.

Bibliographische Detailangaben
Veröffentlicht in:Journal of experimental botany. - 1985. - 66(2015), 18 vom: 07. Sept., Seite 5417-27
1. Verfasser: Krajewski, Paweł (VerfasserIn)
Weitere Verfasser: Chen, Dijun, Ćwiek, Hanna, van Dijk, Aalt D J, Fiorani, Fabio, Kersey, Paul, Klukas, Christian, Lange, Matthias, Markiewicz, Augustyn, Nap, Jan Peter, van Oeveren, Jan, Pommier, Cyril, Scholz, Uwe, van Schriek, Marco, Usadel, Björn, Weise, Stephan
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2015
Zugriff auf das übergeordnete Werk:Journal of experimental botany
Schlagworte:Journal Article Research Support, Non-U.S. Gov't Data formatting data interoperability metadata content minimum information recommendations phenotyping standardization.
Beschreibung
Zusammenfassung:© The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissionsoup.com.
Recent methodological developments in plant phenotyping, as well as the growing importance of its applications in plant science and breeding, are resulting in a fast accumulation of multidimensional data. There is great potential for expediting both discovery and application if these data are made publicly available for analysis. However, collection and storage of phenotypic observations is not yet sufficiently governed by standards that would ensure interoperability among data providers and precisely link specific phenotypes and associated genomic sequence information. This lack of standards is mainly a result of a large variability of phenotyping protocols, the multitude of phenotypic traits that are measured, and the dependence of these traits on the environment. This paper discusses the current situation of standardization in the area of phenomics, points out the problems and shortages, and presents the areas that would benefit from improvement in this field. In addition, the foundations of the work that could revise the situation are proposed, and practical solutions developed by the authors are introduced
Beschreibung:Date Completed 16.05.2016
Date Revised 21.08.2015
published: Print-Electronic
ErratumIn: J Exp Bot. 2018 Mar 24;69(7):1819. - PMID 29471492
Citation Status MEDLINE
ISSN:1460-2431
DOI:10.1093/jxb/erv271