Genome-wide identification and analysis of the SBP-box family genes in apple (Malus × domestica Borkh.)

Genome-wide identification and analysis of the SBP-box family genes in apple (Malus × domestica Borkh.)

Copyright © 2013 Elsevier Masson SAS. All rights reserved.

Bibliographische Detailangaben
Veröffentlicht in:Plant physiology and biochemistry : PPB. - 1991. - 70(2013) vom: 01. Sept., Seite 100-14
1. Verfasser: Li, Jun (VerfasserIn)
Weitere Verfasser: Hou, Hongmin, Li, Xiaoqin, Xiang, Jiang, Yin, Xiangjing, Gao, Hua, Zheng, Yi, Bassett, Carole L, Wang, Xiping
Format: Online-Aufsatz
Sprache:English
Veröffentlicht: 2013
Zugriff auf das übergeordnete Werk:Plant physiology and biochemistry : PPB
Schlagworte:Journal Article Research Support, Non-U.S. Gov't ABA Apple Eth GA Gene expression Hormone response MdmiR156 MeJA mehr... NLS Phylogeny SA SBP SBP-box gene SPL SQUAMOSA promoter binding protein SQUAMOSA promoter binding protein-like Synteny aa abscisic acid amino acid(s) ethylene gibberellin methyl jasmonate miRNA microRNA nuclear localization signal salicylic acid Plant Growth Regulators Plant Proteins Transcription Factors
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100 1 |a Li, Jun  |e verfasserin  |4 aut 
245 1 0 |a Genome-wide identification and analysis of the SBP-box family genes in apple (Malus × domestica Borkh.) 
264 1 |c 2013 
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500 |a Date Completed 13.02.2014 
500 |a Date Revised 30.09.2020 
500 |a published: Print-Electronic 
500 |a Citation Status MEDLINE 
520 |a Copyright © 2013 Elsevier Masson SAS. All rights reserved. 
520 |a SQUAMOSA promoter binding protein (SBP)-box genes encode a family of plant-specific transcription factors and play many crucial roles in plant development. In this study, 27 SBP-box gene family members were identified in the apple (Malus × domestica Borkh.) genome, 15 of which were suggested to be putative targets of MdmiR156. Plant SBPs were classified into eight groups according to the phylogenetic analysis of SBP-domain proteins. Gene structure, gene chromosomal location and synteny analyses of MdSBP genes within the apple genome demonstrated that tandem and segmental duplications, as well as whole genome duplications, have likely contributed to the expansion and evolution of the SBP-box gene family in apple. Additionally, synteny analysis between apple and Arabidopsis indicated that several paired homologs of MdSBP and AtSPL genes were located in syntenic genomic regions. Tissue-specific expression analysis of MdSBP genes in apple demonstrated their diversified spatiotemporal expression patterns. Most MdmiR156-targeted MdSBP genes, which had relatively high transcript levels in stems, leaves, apical buds and some floral organs, exhibited a more differential expression pattern than most MdmiR156-nontargeted MdSBP genes. Finally, expression analysis of MdSBP genes in leaves upon various plant hormone treatments showed that many MdSBP genes were responsive to different plant hormones, indicating that MdSBP genes may be involved in responses to hormone signaling during stress or in apple development 
650 4 |a Journal Article 
650 4 |a Research Support, Non-U.S. Gov't 
650 4 |a ABA 
650 4 |a Apple 
650 4 |a Eth 
650 4 |a GA 
650 4 |a Gene expression 
650 4 |a Hormone response 
650 4 |a MdmiR156 
650 4 |a MeJA 
650 4 |a NLS 
650 4 |a Phylogeny 
650 4 |a SA 
650 4 |a SBP 
650 4 |a SBP-box gene 
650 4 |a SPL 
650 4 |a SQUAMOSA promoter binding protein 
650 4 |a SQUAMOSA promoter binding protein-like 
650 4 |a Synteny 
650 4 |a aa 
650 4 |a abscisic acid 
650 4 |a amino acid(s) 
650 4 |a ethylene 
650 4 |a gibberellin 
650 4 |a methyl jasmonate 
650 4 |a miRNA 
650 4 |a microRNA 
650 4 |a nuclear localization signal 
650 4 |a salicylic acid 
650 7 |a Plant Growth Regulators  |2 NLM 
650 7 |a Plant Proteins  |2 NLM 
650 7 |a Transcription Factors  |2 NLM 
700 1 |a Hou, Hongmin  |e verfasserin  |4 aut 
700 1 |a Li, Xiaoqin  |e verfasserin  |4 aut 
700 1 |a Xiang, Jiang  |e verfasserin  |4 aut 
700 1 |a Yin, Xiangjing  |e verfasserin  |4 aut 
700 1 |a Gao, Hua  |e verfasserin  |4 aut 
700 1 |a Zheng, Yi  |e verfasserin  |4 aut 
700 1 |a Bassett, Carole L  |e verfasserin  |4 aut 
700 1 |a Wang, Xiping  |e verfasserin  |4 aut 
773 0 8 |i Enthalten in  |t Plant physiology and biochemistry : PPB  |d 1991  |g 70(2013) vom: 01. Sept., Seite 100-14  |w (DE-627)NLM098178261  |x 1873-2690  |7 nnns 
773 1 8 |g volume:70  |g year:2013  |g day:01  |g month:09  |g pages:100-14 
856 4 0 |u http://dx.doi.org/10.1016/j.plaphy.2013.05.021  |3 Volltext 
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