Pulmonary surfactant associated gene variants in mixed ethnic population of Han and Zhuang

OBJECTIVE: To explore the prevalence of pulmonary surfactant associated pathway genes functional variants in Chinese population

Détails bibliographiques
Publié dans:Zhonghua er ke za zhi = Chinese journal of pediatrics. - 1960. - 50(2012), 11 vom: 09. Nov., Seite 843-6
Auteur principal: Chen, Yu-jun (Auteur)
Autres auteurs: Chen, Shao-ke, DePass, Kelcey, Wegner, Daniel J, Hamvas, Aaron, Nong, Guang-min, Wang, Ya-zhou, Fan, Xin, Luo, Jing-si
Format: Article
Langue:Chinese
Publié: 2012
Accès à la collection:Zhonghua er ke za zhi = Chinese journal of pediatrics
Sujets:Journal Article ABCA3 protein, human ATP-Binding Cassette Transporters Pulmonary Surfactant-Associated Protein C Pulmonary Surfactant-Associated Proteins SFTPC protein, human 1-Acylglycerophosphocholine O-Acyltransferase EC 2.3.1.23
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100 1 |a Chen, Yu-jun  |e verfasserin  |4 aut 
245 1 0 |a Pulmonary surfactant associated gene variants in mixed ethnic population of Han and Zhuang 
264 1 |c 2012 
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500 |a published: Print 
500 |a Citation Status MEDLINE 
520 |a OBJECTIVE: To explore the prevalence of pulmonary surfactant associated pathway genes functional variants in Chinese population 
520 |a METHOD: Using a cohort of 258 mixed ethnic population of Han and Zhuang, we pooled DNA samples from 146 term male infants and 112 term female infants and then used an Ill umina next generation sequencing platform to perform the complete exonic resequencing in 6 target genes:surfactant protein-B (SFTPB), surfactant protein-C (SFTPC), ATP-binding cassette transporter A3 (ABCA3), lysophospholipid acyltransferase 1 (LPCAT1), choline phosphotransferase 1 (CHPT1), phosphate cytidylyltransferase 1, choline, beta (PCYT1B). Collapsing methods was used to determine the functional allele frequency 
520 |a RESULT: (1) Altogether, 128 variants were found, including 44 synonymous variants, 66 nonsynonymous variants and 18 insertions-deletions. Of these, 28 variants were predicted to alter protein function. Two of these variants were seen twice, the rest variants were only seen once, for a total of 30 functional alleles; (2) ABCA3 had the most functional variants in both male and female groups with the minor allele frequencies of 0.014 (1.4%) and 0.04 (4%), respectively. The total functional allele frequencies of 6 genes were 0.041 (4.1%) and 0.08 (8%) in the two groups, respectively (P = 0.06) 
520 |a CONCLUSION: (1) Functional variants in pulmonary surfactant associated pathway genes are present in the mixed Han-Zhuang population. (2) ABCA3 contained the most functional variants suggesting that ABCA3 could contribute significantly to neonatal respiratory distress syndrome and other lung disease 
650 4 |a Journal Article 
650 7 |a ABCA3 protein, human  |2 NLM 
650 7 |a ATP-Binding Cassette Transporters  |2 NLM 
650 7 |a Pulmonary Surfactant-Associated Protein C  |2 NLM 
650 7 |a Pulmonary Surfactant-Associated Proteins  |2 NLM 
650 7 |a SFTPC protein, human  |2 NLM 
650 7 |a 1-Acylglycerophosphocholine O-Acyltransferase  |2 NLM 
650 7 |a EC 2.3.1.23  |2 NLM 
700 1 |a Chen, Shao-ke  |e verfasserin  |4 aut 
700 1 |a DePass, Kelcey  |e verfasserin  |4 aut 
700 1 |a Wegner, Daniel J  |e verfasserin  |4 aut 
700 1 |a Hamvas, Aaron  |e verfasserin  |4 aut 
700 1 |a Nong, Guang-min  |e verfasserin  |4 aut 
700 1 |a Wang, Ya-zhou  |e verfasserin  |4 aut 
700 1 |a Fan, Xin  |e verfasserin  |4 aut 
700 1 |a Luo, Jing-si  |e verfasserin  |4 aut 
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