Similarity analysis of DNA sequences based on the weighted pseudo-entropy
Copyright © 2010 Wiley Periodicals, Inc.
| Publié dans: | Journal of computational chemistry. - 1984. - 32(2011), 4 vom: 30. März, Seite 675-80 |
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| Auteur principal: | |
| Autres auteurs: | , , , |
| Format: | Article en ligne |
| Langue: | English |
| Publié: |
2011
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| Accès à la collection: | Journal of computational chemistry |
| Sujets: | Evaluation Study Journal Article Research Support, Non-U.S. Gov't beta-Globins DNA 9007-49-2 |
| Résumé: | Copyright © 2010 Wiley Periodicals, Inc. A DNA primary sequence is a string consisting of letters on an alphabet Ω = {a, c, g, t}. Based on all of the 2-combinations of the set Ω, here the repetition is allowed, we transform a DNA primary sequence into a special sequence over a set with cardinality 10. With the 10-letter sequence, we associate 10 nonnegative numerical sequences and then derive a 10-component vector by means of a weighted pseudo-entropy, which can reflect the information on elements of a sequence and, especially, the order relation among them. The new quantitative characterization of DNA sequences is sensitive to substitution of the string elements. The examination of the relationship among β-globin genes of 15 species illustrates the utility of the proposed approach |
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| Description: | Date Completed 04.05.2011 Date Revised 10.12.2019 published: Print-Electronic Citation Status MEDLINE |
| ISSN: | 1096-987X |
| DOI: | 10.1002/jcc.21656 |