Journal Article Arabidopsis thaliana Gossypium hirsutum Transcription Factors ABA-Dependent pathway Arabidopsis Proteins Gene expression analysis Gossypium arboreum Gossypium raimondii Homeobox gene Indoleacetic Acids MADS-box genes Phylogenetic analysis Plant Proteins RNA Splicing Factors SmE Water deficit alternative RNA splicing alternative splicing auxin signaling cold acclimation heat acclimation root apical meristem root development splicing factor temperature adaptation temperature response temperature signaling